Make research referenceable from the start. Will this research still be explainable in the future?

State becomes coordinate.

NMRP is not a free membership model.

Access begins only after the research theme and scope of research accountability have been reviewed.

Overview

What is NMRP

Noster Metabolite Reference Program (NMRP) is a research reference infrastructure that defines an individual biological State as a relational structure based on differences among molecules or metabolites.

Research has little meaning if it cannot be compared later.
It does not become knowledge if it cannot be reinterpreted.
It does not endure if it cannot be explained in the future.

Before research begins, NMRP designs what will be compared, under which assumptions it will be interpreted, and how far comparability and accountability will be carried.
Definition, granularity, comparison structure, interpretation scope, and research accountability are fixed before the research starts. This allows research to remain not merely a one-time result, but knowledge that can be compared, reinterpreted, and referenced over time.

NMRP Architecture

NMRP is not limited to defining States. It connects State discovery, individual Mapping,
the understanding of State movement, and future prediction and simulation within one reference architecture.

NMRP Architecture - A single reference architecture connects State discovery, mapping, dynamics, prediction, and simulation. Phase 1 - Core Discover States. Reference Units, State Definition, and Panels define the relationships that constitute a State. Phase 2 - Mapping Map individuals into the State space. A new individual is placed into a predefined reference space and described reproducibly under the same conditions. Phase 3 - Dynamics Understand how States move. Clarify movement between States, direction, Transition, and temporal change structures. Phase 4 - State OS Drawing on accumulated State and Transition structures, predict future States and simulate how a State moves under different intervention conditions. Specific calculation methods, decision conditions, and implementation specifications are managed internally within NMRP.

State Definition

State as Relational Structure

Conventional research often treats State as a label, such as healthy, diseased, impaired glucose tolerance, inflammatory, or non-responsive.
In many cases, however, these are names assigned to observed outcomes rather than the State itself. NMRP does not treat State as a single label.
A State is a structure defined by the relationships formed among differences in multiple molecules or metabolites.
The fact that one metabolite has increased is not sufficient to define a State. What matters is how that change relates to changes in other metabolites.

A difference is only a number.
Meaning exists only in the relationships among differences.

Difference as Meaning

The starting point of NMRP is the “difference.” Here, a difference means a numerical difference calculated between predefined comparison targets using quantitative values of the molecule or metabolite of interest.

  • Comparison between different groups, such as a disease group and a healthy group

  • Comparison between different time points within the same individual, such as before and after intervention, age-related change, or before and after treatment

A difference by itself is merely a number. It becomes a meaningful structural unit only when
the target molecule, biological context, measurement conditions, comparison framework, interpretation scope, evidence level, and research accountability are defined together.
NMRP treats this meaning-bearing difference as a Reference Unit.

Reference Unit

The smallest unit of NMRP is not a molecule list or an analysis menu. It is the Reference Unit.
A Reference Unit is the smallest unit of research reference that defines what is being studied, within which comparison structure, how far it may be interpreted, and who carries accountability for that interpretation.

Reference Unit Structure - The smallest unit for structuring the information used define a State. A State becomes referenceable only when these six elements are defined as an integrated structure.

Six Elements Held by a Reference Unit

  • Target Molecule | What is being observed

  • Biological Context | Whose State and in what context

  • Measurement Conditions | How and under what conditions it was measured

  • Comparison Framework | What it is compared against

  • Interpretation Scope | How far the result may be interpreted

  • Evidence Level | How much is known

Even when the molecule name is the same, a different Reference Unit represents a different research object. A Reference Unit allows studies to be compared under the same assumptions and to become referenceable by future research.

State mapping

A biological State itself cannot be observed directly. Molecules and metabolites, however, can be measured.
NMRP structures measurable molecular information as Reference Units and represents
an individual as a vector composed of multiple Reference Units.
By mapping this vector into
a predefined reference space,
the individual State is described
as a position in that space.

Mapping a State into the Reference Space - An individual is represented as a vector composed of multiple Reference Unit and mapped into a predefined reference space. The same reference structure and conditions reproduce the same position.

A new space is not rebuilt for each individual. Using the same reference structure and the same conditions reproduces the same position for the same individual.
The individual State can therefore be expressed not merely as a diagnosis, but as position, distance, direction, and movement within the reference space.
Rather than forcing every individual into an existing State, NMRP describes the individual through their relationship to the reference structure.

Panel Design

A Panel is not an assortment of measurement items or a product menu. It is an implementation structure for explaining a State as a referenceable structure.
NMRP first defines the Reference Unit and then designs the measurements required
to establish that Reference Unit.
A Panel is designed around the relationships, roles, and contributions of the selected Reference Units that explain a State.
For example, measuring HYA, butyrate, bile acids, and lipid mediators is not by itself sufficient
to explain intestinal inflammation. What matters is the relationship they form together.

Research Processes in Panel Design

  • Form molecular hypotheses that explain the State

  • Organize relationships among molecules

  • Understand the structure of the metabolic network

  • Select the Reference Units required to explain the State

  • Evaluate the role and contribution of each Reference Unit

We do not measure something
simply because it can be measured.
We measure it
because it is necessary
to discuss the State.

Why Metabolites

Inflammation, metabolic dysfunction, immune response, and intestinal barrier function
are all biological States, yet the State itself cannot be observed directly.
Metabolites can be measured. They connect inputs from diet and environment, transformation
by gut microbes and the host,
and host responses.
Some metabolites are more than markers that reflect a State. They function as active molecules related to metabolism, immunity, inflammatory response, and intestinal barrier function, and participate in maintaining homeostasis.
NMRP therefore treats metabolites not as isolated measurement targets, but as elements
of the relational structure
that constitutes a State.

Why Gut Microbial Lipid Metabolites

Gut microbiota connect the external environment with host physiology. Dietary lipids, carbohydrates, and fibers are transformed by gut microbes, producing diverse metabolites related to host metabolism, immunity, inflammation, and barrier function.
Lipid metabolites are especially important because they are associated with host receptors
and cellular responses and can also be organized as metabolic networks derived from defined substrates.
By reading metabolites derived from linoleic acid, oleic acid, arachidonic acid, EPA, and other substrates as networks rather than isolated increases or decreases, it becomes possible to construct a space in which State can be represented.

Reference Unit

Research Reference System

The Research Reference System consists of a Research Reference Hierarchy that organizes the elements of research, and a Research Reference Process that connects reference design, measurement, Mapping, comparison, interpretation, and research accountability.
Biological phenomena and research structures are not the same. Biological phenomena occur in nature. Research, however, requires a shared reference system if results are to remain comparable.
Even when the same molecule is studied, results cannot be compared directly if measurement conditions, biological context, comparison conditions, or interpretation scope differ.
NMRP connects reference design, measurement, State Mapping, comparison, interpretation, and research accountability as one Research Reference System.

Research Reference Process - From reference design to research accountability: an infrastructure fore transparent and reproducible research. 01 Reference Design - Define the Reference Unit and research assumptions. 02 Measurement & Data - Acquire comparable data under specified condition 03 State Mapping - Map the individual into the defined reference space 04 Comparison - Compare with reference States and prior data 05 Interpretation - Interpret within predefined scope and limitations 06 Research Accountability - Ensure responsibility and traceability / This infrastructure supports transparency, reproducibility, and the accumulation of knowledge.

This structure makes research comparable, re-analyzable, and cumulative as knowledge. NMRP designs and maintains this Research Reference System.

1. Metabolite Category 2.Metabolite Network 3. Reference Unit 4. Panel 5. Measurement System

HYA Reference Case

HYA is the first Reference Case systematically established within NMRP.
HYA research has remained connected over an extended period under a shared molecular definition and research framework, progressing  from gut microbial fatty-acid metabolism and metabolite identification to biosynthetic pathways, host physiology, and disease research.

HYA Reference Case - An example of how HYA research become connected across time and established as reference knowledge. 01 Gut Microbial Metabolism - Conversion of dietary components 02 Metabolite Identification - Molecular identification and definition 03 Biosynthetic Pathway - Clarification of metabolic pathways 04 Host Physiology - Relationship with host responses 05 Disease Research - Expansion into disease research / Establishment of the HYA Reference Case / HYA research has remained connected through a shared molecular definition and research framework, becoming knowledge that can be referenced across time.

The HYA Reference Case does not merely demonstrate a large body of research. It demonstrates that when definitions, measurement, comparison, and interpretation assumptions are maintained, research becomes knowledge that remains referenceable across time. Depending on the project, NOSTER may participate in research design, method development, metabolic-network interpretation, and scientific publication.

Who This Is For

NMRP is a Research Reference Infrastructure for individuals and organizations that will be held accountable for explaining research later.

  • Principal investigators who will carry publication responsibility

  • Companies responsible for claims and regulatory explanation

  • Drug-discovery and business leaders who connect exploration with validation

  • Organizations responsible for research design, data foundations, and future AI integration

What they share is the responsibility to preserve research not as a one-time output, but as knowledge that can be compared, reinterpreted, and explained over time.

What NMRP Does Not Do

NMRP does not provide:

  • One-off contract analysis

  • Guarantees of research outcomes

  • A menu of measurement services

  • Immediate-access free membership functions

  • An open database that aggregates or shares unpublished project data

Not providing these functions is an essential condition for NMRP to remain a Research Reference Infrastructure.

Appendix

Pricing & Engagement

NMRP is an annual program designed to establish research in a referenceable form.
Pricing is not determined solely by the number of measurements or analyses.

  • Research scope

  • Reference responsibility

  • Comparability

  • Depth of Panel design

  • Scope of research accountability

Different research themes require different depths of accountability. NMRP does not impose
a uniform design that ignores those differences.
Do not publish specific price ranges on the general website. Terms are individually designed after the research theme, reference scope, and responsibility scope have been reviewed.

Participation Flow

1 Understand the NMRP philosophy and structure on the website -> 2 Submit an inquiry through the dedicated NMRP Contact Form -> 3 Initial meeting to review research theme, alignment, and responsibility scope -> 4 When necessary, share detailed research information after execution of an NDA -> 5 Agreement on terms and contract, in principle on an annual basis -> 6 Begin NMRP Reference Access

Confidentiality

The more important the research, the more sensitive the information involved. NMRP is designed on the premise that research confidentiality must be protected.
The page and Contact Form must not request specific molecule names, product names, unpublished numerical values, patient information, personal data, or other confidential information.
Sensitive information is shared only after the initial meeting and, when appropriate, after an NDA has been executed.

Vision

A world in which research remains referenceable across time.

A world in which definitions are shared, research remains connected in a comparable form, and knowledge continues to accumulate.
NMRP is not ultimately seeking isolated research outputs. It builds a reference architecture through which research can continue to be explained, compared, reinterpreted, and connected to subsequent research and future prediction.
Drawing on accumulated State and Transition structures, NMRP predicts future States and simulates how a State moves under different intervention conditions.

Research does not become valuable simply because it is measured.
It becomes knowledge because it remains referenceable.